Tried searching for this, but couldn't find anything similar.
We were just about to finish a Legend of the Veil voyage, while running a Reaper emissary flag. We picked up a Ghost storage crate, and when it was put down on the bottom deck of the ship, which had a small amount of water, all of the treasure we acquired up to that point on the ship simply disappeared. We had several chests, Athena's loot, flags, log books, Ghost storage crates, and an actual storage crate or two. Everything was gone, only leaving what was left in our barrels. Very strange... Has anybody else had this problem? I hope it isn't a new bug we have to worry about...